rs31537220 SNP Detail

Summary

• ID
  rs31537220
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:78333044 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAGTTTCT GGCCCCTCTG
  GTCCTCCCGT CCACCTAGCC CTCTCACCTC AGCAGCTAAG TGCTGGAGTC AGAAGGAACC
  GGGGCACCAT ATGGATTGCC TTGCTACCCC ACCCCACCCC ACCCTGTGAG TTTAGCAGGG
  GGATCTTTCT CCTAGGCCTG TCAATCCGGC ATATCAGCAT CTTCCCACAG AGGAGCTGGA
  R
  AGATGCTGGG TGGATAGGCA GAAGCATGGA TAAGAGAAAG GAGTGGGAGG GGTCAGGCCT
  CACTGTGAAC ATGGCTCTTT CTATGGACAA GCTGAAGGAC AGAGGGCAGA AAGACAGCAC
  TGAGGGAGGG ACAGTGGCCT GCTCTGTGGT GGACAGGACA TTTTGCAGAG CCGGGCTCCA
  TATAACTTTG CCACCAGACG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48062583	NES12078514	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31537220					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48062583	NES12078514	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78333044 () rs orientation: forward

Symbol	Name	Function Class
Rr369958	regulatory region 369958	884 bp downstream
Rr390961	regulatory region 390961	180 bp upstream
Rr505277	regulatory region 505277	within coordinates
Rr505278	regulatory region 505278	1017 bp distal
Rr505279	regulatory region 505279	417 bp distal
Rr505280	regulatory region 505280	256 bp proximal
Rr505281	regulatory region 505281	1998 bp proximal
Tmprss6	transmembrane serine protease 6	within coordinates
Tssr131957	transcription start site region 131957	536 bp upstream