rs31537269 SNP Detail

Summary

• ID
  rs31537269
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:72800047 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGCTTGTTT AAATGAGACT
  TCTGTCTTCT TGCAGGGCCA ATCAGTGGTA CATCCAAAAC AGACGCAGAT ATATGGTTAA
  TGTTGGCATT GTCAAAATCC AGATGCAAGT TTTCCTTAGT AATAACTATG ATGTGGTTTC
  TCCTCTCCTT AAGCAGCACA AATGGCTCGT TTTTATTAAT TATTCCTCAG AAAAGACAGG
  W
  CCATGGCATT GGCAGGGGAG GATGTTCGTG GCTCAGTACT GGATTTGGGG ATTTGTGTGT
  AGATGAGAAT AACAGCCGCC AGGTCATCAT TATCCTTAGC TTGAACCTGA GCTCATTAAT
  ATGTATGCAA GTGATAAACA TAAAGGCCTT TCTCAAAGCC GGTCGCCTAA CCTGTCTGAA
  AGTAAGCCAA AAGGAATACT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46578955	NES10451777	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31537269					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46578955	NES10451777	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:72800047 () rs orientation: forward

Symbol	Name	Function Class
4933408A14Rik	RIKEN cDNA 4933408A14 gene	1703 bp upstream
4933408M05Rik	RIKEN cDNA 4933408M05 gene	within coordinates
Cnga1	cyclic nucleotide gated channel alpha 1	within coordinates
Tssr46616	transcription start site region 46616	1705 bp upstream
Tssr51320	transcription start site region 51320	21 bp downstream
Tssr51321	transcription start site region 51321	54 bp downstream