rs31537897 SNP Detail

Summary

• ID
  rs31537897
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:78334551 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACACACAC ACACACACAC
  ACACACACAC ACACACACAC GGCTGGGCAA TCATGCCCTG GGGGCCGGCC AGCTGCCTGA
  GCTCAGTGAT GACGTCACAA GCCACAGGGA CTTTTAGCAA ATGACTCAGC CTCTGGGCCT
  CAGGCTTCCC ACAAGCTGTG AGGCTCGTTC AACTGTGAGT CCCTGGAATT CATACTTGAA
  M
  CCAAAATTCA CACTTGGATT CTCCAATGTC TTAGGCTAGT GGCGTTTGGA GGAAGGGCAT
  TCAGGGAAGT GATTGGGTCA GGAAGGGGCT GTACCTGGTG AATGCATTCA TCTAGCAGAT
  AAAGGAAGCA CTGGTGGGTG GCCTCAAGCC CCCACCCCTA CCCTGCACCA TCAGGCAAGC
  CCCTTCGGCC CTGCCTCATC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48062591	NES12078457	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31537897					SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48062591	NES12078457	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78334551 () rs orientation: forward

Symbol	Name	Function Class
Rr390961	regulatory region 390961	within coordinates
Rr505277	regulatory region 505277	1461 bp distal
Rr505279	regulatory region 505279	1924 bp distal
Rr505280	regulatory region 505280	within coordinates
Rr505281	regulatory region 505281	491 bp proximal
Tmprss6	transmembrane serine protease 6	within coordinates
Tssr131957	transcription start site region 131957	965 bp downstream