rs31537900 SNP Detail

Summary

• ID
  rs31537900
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:78335104 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTTAAGGA CAGGATCTGA
  GTCCGCCTCC CTTGCTCGAC TGTGGGGAGC ACATAATCGC TTTCCACACC TGTGTGGCAC
  CGAGTAAGAG CCATTTAGCG ATTGTGGTTG GTACCGTCTC CACCCACCAT CTTATTTAGT
  CTCCAGTGGA AGGCGTCTCG TTCCAGGCCC TTTGCTTTGT TTGTTTCTGT GTAATAGAAC
  R
  CACTCTTGTT TGGGACAGCA GGTCTGTGGA GGGGAAGCAA TGACTTCTGG GAGTCAGTCC
  CCTCCTTCCA CCATGTTGGT TCCAGGGACT GAACTCAGGT CCTCAAACTT GCCGGCAAGC
  CTCTTAACCC ACTCAGCCAT CTTGCATGTC CATGGCTTCC TTCCTTTCTT TCTTTCTTTC
  TTTCTTTCTT TCTTTCTTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48062597	NES12078426	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31537900					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48062597	NES12078426	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78335104 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr390961	regulatory region 390961			within coordinates
Rr505280	regulatory region 505280			51 bp distal
Rr505281	regulatory region 505281			41 bp distal
Tmprss6	transmembrane serine protease 6			Intron
				Noncoding-Transcript-Variant
Tssr131957	transcription start site region 131957			1518 bp downstream