rs3153876 SNP Detail

Summary

• ID
  rs3153876
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25233732 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAATA ATTATCTGTA GCTAGGAGAA
  R
  TTATACTCAG AATAAACTAA AGTTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39522143	mCV25256836	ABI	CRAMUS_MOUSE	f	SNP	G	G	G		A	G
ss48356873	NES12235491	PERLEGEN	MM_PANEL2	f	SNP			G	G			G	G		A	A	A		G
ss145372905	ENSMUSSNP3074080	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G			G
ss325335464	CHEV_17_25151703	CHEVERUD	SCREENING_POP	f	SNP									G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs3153876					SNP	G	G	G	G	A	G	G	G	G	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48356873	NES12235491	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25233732 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8751	CpG island 8751	137 bp distal
Cpgi8752	CpG island 8752	349 bp proximal
Cramp1	cramped chromatin regulator 1	within coordinates
Ift140	intraflagellar transport 140	1324 bp upstream
Rr339341	regulatory region 339341	within coordinates
Rr405099	regulatory region 405099	1002 bp upstream
Tssr143119	transcription start site region 143119	1310 bp upstream
Tssr143120	transcription start site region 143120	1585 bp upstream
Tssr143121	transcription start site region 143121	1748 bp upstream
Tssr143122	transcription start site region 143122	1823 bp upstream
Tssr146804	transcription start site region 146804	424 bp upstream
Tssr146805	transcription start site region 146805	931 bp downstream
Tssr146806	transcription start site region 146806	950 bp downstream
Tssr146807	transcription start site region 146807	983 bp downstream
Tssr146808	transcription start site region 146808	1008 bp downstream
Tssr146809	transcription start site region 146809	1040 bp downstream