rs3153877 SNP Detail

Summary

• ID
  rs3153877
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25234910 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCCACTCGC CCTCCCACAC
  CCGGGACGCC GCGCTCTAAA CAGTTCCGGC TACGGCGGCC GCCGGGGACC TGAAGTCGGC
  GCCGGAGCGG GGAGGGGCGA ACGTCCCGCA AAAAAGACGA GCACGTCCAG CTTTTCTGCG
  GGCGCGCCCA ACCAGCTAGG CTGCCATTGG TCAGCAGGCG TTACGTGCGC GCGCCCGCAC
  S
  ATGTACAGGG GCGGGCCCGC AACGTGGGGC GTGTTGTGAC GGCAACCTCG CGCCCTTGCG
  GATCATGCGT CTTTTCCGAT TGGCCAACCG ACAGCCAATA GGATCAGCGT GCTGGCTGTG
  ATTGGCTGAG ACTATGTTGA CGGATGCGTG AGAAGAAATC ACCGCCTCAG CGGGGCGTCT
  TGAAGCGCGC GGGAACTCGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325335466	CHEV_17_25152881	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs3153877					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25234910 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8751	CpG island 8751	1315 bp distal
Cpgi8752	CpG island 8752	within coordinates
Cramp1	cramped chromatin regulator 1	148 bp upstream
Ift140	intraflagellar transport 140	146 bp upstream
Rr339341	regulatory region 339341	within coordinates
Rr405099	regulatory region 405099	within coordinates
Tssr143119	transcription start site region 143119	132 bp upstream
Tssr143120	transcription start site region 143120	407 bp upstream
Tssr143121	transcription start site region 143121	570 bp upstream
Tssr143122	transcription start site region 143122	645 bp upstream
Tssr146804	transcription start site region 146804	1602 bp upstream
Tssr146805	transcription start site region 146805	233 bp upstream
Tssr146806	transcription start site region 146806	218 bp upstream
Tssr146807	transcription start site region 146807	183 bp upstream
Tssr146808	transcription start site region 146808	145 bp upstream
Tssr146809	transcription start site region 146809	115 bp upstream