rs3153880 SNP Detail

Summary

• ID
  rs3153880
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25235212 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCGAA GCGATAAGGA AATGTGTTTT
  W
  AAAACTCTAA TGCTTATGCA TGTGG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss39580184	mCV25256848	ABI	CRAMUS_MOUSE	f	SNP	A	A		T	A
ss48356871	NES12235495	PERLEGEN	MM_PANEL2	f	SNP		A	A			A		T	T		A
ss145372918	ENSMUSSNP1816028	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A			A
ss325335467	CHEV_17_25153183	CHEVERUD	SCREENING_POP	f	SNP							A			T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs3153880					SNP	A	A	A	T	A	A	A	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48356871	NES12235495	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25235212 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8751	CpG island 8751	1617 bp distal
Cpgi8752	CpG island 8752	within coordinates
Cramp1	cramped chromatin regulator 1	450 bp upstream
Ift140	intraflagellar transport 140	within coordinates
Rr339341	regulatory region 339341	within coordinates
Rr405099	regulatory region 405099	177 bp downstream
Tssr143119	transcription start site region 143119	114 bp downstream
Tssr143120	transcription start site region 143120	105 bp upstream
Tssr143121	transcription start site region 143121	268 bp upstream
Tssr143122	transcription start site region 143122	343 bp upstream
Tssr146804	transcription start site region 146804	1904 bp upstream
Tssr146805	transcription start site region 146805	535 bp upstream
Tssr146806	transcription start site region 146806	520 bp upstream
Tssr146807	transcription start site region 146807	485 bp upstream
Tssr146808	transcription start site region 146808	447 bp upstream
Tssr146809	transcription start site region 146809	417 bp upstream