rs3153881 SNP Detail

Summary

• ID
  rs3153881
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25235330 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGAC CGTGCTACTG CGCCTGCTCT
  Y
  CAGCGACACT CGCCGTTGGC TAACA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39487196	mCV25256849	ABI	CRAMUS_MOUSE	f	SNP	C	C				T		C
ss48356870	NES12235497	PERLEGEN	MM_PANEL2	f	SNP		C	C	C	C		C		C	C		T	T	T		C
ss145372922	ENSMUSSNP2926882	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C						C
ss325335468	CHEV_17_25153301	CHEVERUD	SCREENING_POP	f	SNP											C				T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs3153881					SNP	C	C	C	C	C	T	C	C	C	C	C	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48356870	NES12235497	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25235330 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8751	CpG island 8751	1735 bp distal
Cpgi8752	CpG island 8752	within coordinates
Cramp1	cramped chromatin regulator 1	568 bp upstream
Ift140	intraflagellar transport 140	within coordinates
Rr405099	regulatory region 405099	295 bp downstream
Tssr143119	transcription start site region 143119	232 bp downstream
Tssr143120	transcription start site region 143120	within coordinates
Tssr143121	transcription start site region 143121	150 bp upstream
Tssr143122	transcription start site region 143122	225 bp upstream
Tssr146805	transcription start site region 146805	653 bp upstream
Tssr146806	transcription start site region 146806	638 bp upstream
Tssr146807	transcription start site region 146807	603 bp upstream
Tssr146808	transcription start site region 146808	565 bp upstream
Tssr146809	transcription start site region 146809	535 bp upstream