rs3153882 SNP Detail

Summary

• ID
  rs3153882
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25235487 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCTTGGCT CATTGGCGTG
  GACCGTGCTA CTGCGCCTGC TCTTCAGCGA CACTCGCCGT TGGCTAACAC TGGCTAAAGT
  GCACACGGTC ACCCAGGGAA CCCTGTGCCT AGCTGCTGCA AGCCTCTGCT GAGTACCGCT
  TGCAGCGGTC TCTCGAGGCA TCAACGCGCC ACGCGCCGGG GCGGTGTCCG GTACTCAGAA
  S
  GTTCCAGAGA AGCTCTCGAG CCGCGCCTCC CCATCCGATG CAATGCAACT AAGCTCCGCG
  AGGTGCCGAC TGATGGCCTG CGTGGGGTAG GCAGGATGAA CTCGGGGAGA AAAGTATTAG
  GAGCCTTGAC GCAGCTTGCC CCGAGTAGCA AATAGATCTG GCCCACCCAT CAGCGGAAAA
  CCCAAACTGG TCCTAAAGTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39488063	mCV25256947	ABI	CRAMUS_MOUSE	f	SNP	G	C	C	C
ss325335470	CHEV_17_25153458	CHEVERUD	SCREENING_POP	f	SNP					G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3153882					SNP	G	C	C	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25235487 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8751	CpG island 8751	1892 bp distal
Cpgi8752	CpG island 8752	within coordinates
Cramp1	cramped chromatin regulator 1	725 bp upstream
Ift140	intraflagellar transport 140	within coordinates
Rr339341	regulatory region 339341	within coordinates
Rr405099	regulatory region 405099	452 bp downstream
Tssr143119	transcription start site region 143119	389 bp downstream
Tssr143120	transcription start site region 143120	90 bp downstream
Tssr143121	transcription start site region 143121	within coordinates
Tssr143122	transcription start site region 143122	68 bp upstream
Tssr146805	transcription start site region 146805	810 bp upstream
Tssr146806	transcription start site region 146806	795 bp upstream
Tssr146807	transcription start site region 146807	760 bp upstream
Tssr146808	transcription start site region 146808	722 bp upstream
Tssr146809	transcription start site region 146809	692 bp upstream