rs3153883 SNP Detail

Summary

• ID
  rs3153883
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25235611 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACTC GGGGAGAAAA GTATTAGGAG
  Y
  CTTGACGCAG CTTGCCCCGA GTAGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39529386	mCV25256948	ABI	CRAMUS_MOUSE	f	SNP	T	T				C	T
ss48356869	NES12235498	PERLEGEN	MM_PANEL2	f	SNP		T	T	T	T			T	T		C	C	C		T
ss145372932	ENSMUSSNP3046992	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T					T
ss325335471	CHEV_17_25153582	CHEVERUD	SCREENING_POP	f	SNP										T				C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs3153883					SNP	T	T	T	T	T	C	T	T	T	T	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48356869	NES12235498	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25235611 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8752	CpG island 8752	within coordinates
Cramp1	cramped chromatin regulator 1	849 bp upstream
Ift140	intraflagellar transport 140	within coordinates
Rr339341	regulatory region 339341	within coordinates
Rr405099	regulatory region 405099	576 bp downstream
Tssr143119	transcription start site region 143119	513 bp downstream
Tssr143120	transcription start site region 143120	214 bp downstream
Tssr143121	transcription start site region 143121	58 bp downstream
Tssr143122	transcription start site region 143122	49 bp downstream
Tssr146805	transcription start site region 146805	934 bp upstream
Tssr146806	transcription start site region 146806	919 bp upstream
Tssr146807	transcription start site region 146807	884 bp upstream
Tssr146808	transcription start site region 146808	846 bp upstream
Tssr146809	transcription start site region 146809	816 bp upstream