rs3153884 SNP Detail

Summary

• ID
  rs3153884
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25235873 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATCT GGCGAAGTTA GATTCCTATA
  M
  CTAAGGTGCA GAGGGGTCTG GGGCT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39510532	mCV25256949	ABI	CRAMUS_MOUSE	f	SNP	A	C	A
ss145372937	ENSMUSSNP1187079	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		A
ss325335472	CHEV_17_25153844	CHEVERUD	SCREENING_POP	f	SNP				A	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3153884					SNP	A	C	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25235873 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8752	CpG island 8752	within coordinates
Cramp1	cramped chromatin regulator 1	1111 bp upstream
Ift140	intraflagellar transport 140	within coordinates
Rr339341	regulatory region 339341	within coordinates
Rr405099	regulatory region 405099	838 bp downstream
Tssr143119	transcription start site region 143119	775 bp downstream
Tssr143120	transcription start site region 143120	476 bp downstream
Tssr143121	transcription start site region 143121	320 bp downstream
Tssr143122	transcription start site region 143122	311 bp downstream
Tssr146805	transcription start site region 146805	1196 bp upstream
Tssr146806	transcription start site region 146806	1181 bp upstream
Tssr146807	transcription start site region 146807	1146 bp upstream
Tssr146808	transcription start site region 146808	1108 bp upstream
Tssr146809	transcription start site region 146809	1078 bp upstream