rs3153885 SNP Detail

Summary

• ID
  rs3153885
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25235914 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCTG GGGCTGGACC GGGGAGTGGC
  W
  AGAGGTGGGA TGGGATCGAC CTGGG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	LG/J	SM/J
ss39513977	mCV25256959	ABI	CRAMUS_MOUSE	f	SNP	T	A
ss145372940	ENSMUSSNP45604	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss325335473	CHEV_17_25153885	CHEVERUD	SCREENING_POP	f	SNP			T	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	LG/J	SM/J
rs3153885					SNP	T	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25235914 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8752	CpG island 8752	within coordinates
Cramp1	cramped chromatin regulator 1	1152 bp upstream
Ift140	intraflagellar transport 140	within coordinates
Rr339341	regulatory region 339341	within coordinates
Rr405099	regulatory region 405099	879 bp downstream
Tssr143119	transcription start site region 143119	816 bp downstream
Tssr143120	transcription start site region 143120	517 bp downstream
Tssr143121	transcription start site region 143121	361 bp downstream
Tssr143122	transcription start site region 143122	352 bp downstream
Tssr146805	transcription start site region 146805	1237 bp upstream
Tssr146806	transcription start site region 146806	1222 bp upstream
Tssr146807	transcription start site region 146807	1187 bp upstream
Tssr146808	transcription start site region 146808	1149 bp upstream
Tssr146809	transcription start site region 146809	1119 bp upstream