rs3153886 SNP Detail

Summary

• ID
  rs3153886
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25236035 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATCC TAGAGCCCCC TGCTGGACTT
  Y
  TGAGTTGCGG CGTGAGTCCC CCCCG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	LG/J	SM/J
ss39576503	mCV25256960	ABI	CRAMUS_MOUSE	f	SNP	C	T
ss145372945	ENSMUSSNP2992364	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss325335474	CHEV_17_25154006	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	LG/J	SM/J
rs3153886					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25236035 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8752	CpG island 8752	38 bp distal
Cramp1	cramped chromatin regulator 1	1273 bp upstream
Ift140	intraflagellar transport 140	within coordinates
Rr339341	regulatory region 339341	within coordinates
Rr405099	regulatory region 405099	1000 bp downstream
Tssr143119	transcription start site region 143119	937 bp downstream
Tssr143120	transcription start site region 143120	638 bp downstream
Tssr143121	transcription start site region 143121	482 bp downstream
Tssr143122	transcription start site region 143122	473 bp downstream
Tssr146805	transcription start site region 146805	1358 bp upstream
Tssr146806	transcription start site region 146806	1343 bp upstream
Tssr146807	transcription start site region 146807	1308 bp upstream
Tssr146808	transcription start site region 146808	1270 bp upstream
Tssr146809	transcription start site region 146809	1240 bp upstream