rs3153887 SNP Detail

Summary

• ID
  rs3153887
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25236306 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACCC ATCCTCTTGT TGAACAAGAG
  W
  CTCTAAAAGG AGTATCTTGT CTTTA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss39510973	mCV25256961	ABI	CRAMUS_MOUSE	f	SNP	T	T	A
ss145372951	ENSMUSSNP4955523	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
ss325335475	CHEV_17_25154277	CHEVERUD	SCREENING_POP	f	SNP				T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs3153887					SNP	T	T	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25236306 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8752	CpG island 8752	309 bp distal
Cramp1	cramped chromatin regulator 1	1544 bp upstream
Ift140	intraflagellar transport 140	within coordinates
Rr339341	regulatory region 339341	within coordinates
Rr405099	regulatory region 405099	1271 bp downstream
Tssr143119	transcription start site region 143119	1208 bp downstream
Tssr143120	transcription start site region 143120	909 bp downstream
Tssr143121	transcription start site region 143121	753 bp downstream
Tssr143122	transcription start site region 143122	744 bp downstream
Tssr146805	transcription start site region 146805	1629 bp upstream
Tssr146806	transcription start site region 146806	1614 bp upstream
Tssr146807	transcription start site region 146807	1579 bp upstream
Tssr146808	transcription start site region 146808	1541 bp upstream
Tssr146809	transcription start site region 146809	1511 bp upstream