rs31539197 SNP Detail

Summary

• ID
  rs31539197
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:101900961 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTAC ACAAAGAAAC CTGGTCTAAA
  M
  AAAACAAAAC AAACAAACAA ACAAA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46042889	mCV23440929	ABI	CRAMUS_MOUSE	f	SNP	C	C	A	C
ss145564853	ENSMUSSNP5035401	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss322353676	CHEV_7_109400268	CHEVERUD	SCREENING_POP	f	SNP					C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31539197					SNP	C	C	A	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:101900961 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19524	CpG island 19524	770 bp distal
Rhog	ras homolog family member G	1636 bp upstream
Rr652562	regulatory region 652562	1677 bp distal
Rr652563	regulatory region 652563	1141 bp distal
Rr652564	regulatory region 652564	812 bp distal
Tssr2354	transcription start site region 2354	1478 bp downstream
Tssr68330	transcription start site region 68330	1499 bp downstream
Tssr73943	transcription start site region 73943	1668 bp upstream
Tssr73944	transcription start site region 73944	1631 bp upstream
Tssr73945	transcription start site region 73945	1616 bp upstream
Tssr73946	transcription start site region 73946	1420 bp upstream
Tssr73947	transcription start site region 73947	1275 bp upstream
Tssr73948	transcription start site region 73948	1239 bp upstream
Tssr73949	transcription start site region 73949	1206 bp upstream
Tssr73950	transcription start site region 73950	1159 bp upstream