rs3153947 SNP Detail

Summary

• ID
  rs3153947
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25103640 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGTT GCTTCTGGGC AGCTCCCAGG
  K
  AACCCTGGGG ACATGTGCCA CACAC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145368909	ENSMUSSNP4199219	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G	G
ss325334740	CHEV_17_25021611	CHEVERUD	SCREENING_POP	f	SNP				T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs3153947					SNP	T	G	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25103640 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8747	CpG island 8747	1139 bp proximal
Nubp2	nucleotide binding protein 2	within coordinates
Rr339336	regulatory region 339336	360 bp proximal
Rr405096	regulatory region 405096	1601 bp upstream
Spsb3	splA/ryanodine receptor domain and SOCS box containing 3	1977 bp upstream
Tssr143106	transcription start site region 143106	1296 bp upstream
Tssr143107	transcription start site region 143107	1309 bp upstream
Tssr143108	transcription start site region 143108	1336 bp upstream
Tssr143109	transcription start site region 143109	1354 bp upstream
Tssr146788	transcription start site region 146788	1193 bp downstream
Tssr146789	transcription start site region 146789	1206 bp downstream
Tssr146790	transcription start site region 146790	1234 bp downstream
Tssr146791	transcription start site region 146791	1270 bp downstream
Tssr146792	transcription start site region 146792	1638 bp downstream
Tssr146793	transcription start site region 146793	1717 bp downstream