rs3153949 SNP Detail

Summary

• ID
  rs3153949
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25104165 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCTT GATCTTGGTC TCATGTCATA
  Y
  TCTCCATCCA GAGGCTGGGA GAAAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39539466	mCV25251508	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss145368940	ENSMUSSNP4733439	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss325334744	CHEV_17_25022136	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3153949					SNP	C	C	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25104165 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8747	CpG island 8747	614 bp proximal
Nubp2	nucleotide binding protein 2	within coordinates
Rr339336	regulatory region 339336	within coordinates
Rr405096	regulatory region 405096	1076 bp upstream
Spsb3	splA/ryanodine receptor domain and SOCS box containing 3	1452 bp upstream
Tssr143106	transcription start site region 143106	771 bp upstream
Tssr143107	transcription start site region 143107	784 bp upstream
Tssr143108	transcription start site region 143108	811 bp upstream
Tssr143109	transcription start site region 143109	829 bp upstream
Tssr143110	transcription start site region 143110	1498 bp upstream
Tssr143111	transcription start site region 143111	1687 bp upstream
Tssr146788	transcription start site region 146788	668 bp downstream
Tssr146789	transcription start site region 146789	681 bp downstream
Tssr146790	transcription start site region 146790	709 bp downstream
Tssr146791	transcription start site region 146791	745 bp downstream
Tssr146792	transcription start site region 146792	1113 bp downstream
Tssr146793	transcription start site region 146793	1192 bp downstream