rs3153953 SNP Detail

Summary

• ID
  rs3153953
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25105772 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCCC AGCCCGGTCA GGCCCGGCGG
  S
  CGGCGGGTTG ACCTTGCAGG CGGTC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145368963	ENSMUSSNP269634	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
ss325334751	CHEV_17_25023743	CHEVERUD	SCREENING_POP	f	SNP				G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs3153953					SNP	G	G	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25105772 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8747	CpG island 8747	within coordinates
Nubp2	nucleotide binding protein 2	449 bp upstream
Rr339336	regulatory region 339336	within coordinates
Rr405096	regulatory region 405096	230 bp downstream
Spsb3	splA/ryanodine receptor domain and SOCS box containing 3	within coordinates
Tssr143106	transcription start site region 143106	827 bp downstream
Tssr143107	transcription start site region 143107	807 bp downstream
Tssr143108	transcription start site region 143108	781 bp downstream
Tssr143109	transcription start site region 143109	763 bp downstream
Tssr143110	transcription start site region 143110	33 bp downstream
Tssr143111	transcription start site region 143111	80 bp upstream
Tssr146788	transcription start site region 146788	928 bp upstream
Tssr146789	transcription start site region 146789	905 bp upstream
Tssr146790	transcription start site region 146790	889 bp upstream
Tssr146791	transcription start site region 146791	853 bp upstream
Tssr146792	transcription start site region 146792	445 bp upstream
Tssr146793	transcription start site region 146793	404 bp upstream