rs3153954 SNP Detail

Summary

• ID
  rs3153954
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25106144 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTAG GACAGAGTCG ACTATTAGAC
  C
  AAGACAGTCC ACTCGGGAGA GGAGA                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss145368981	ENSMUSSNP2249047	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	A/J
rs3153954					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25106144 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8747	CpG island 8747	within coordinates
Nubp2	nucleotide binding protein 2	821 bp upstream
Rr339336	regulatory region 339336	within coordinates
Rr405096	regulatory region 405096	602 bp downstream
Spsb3	splA/ryanodine receptor domain and SOCS box containing 3	within coordinates
Tssr143106	transcription start site region 143106	1199 bp downstream
Tssr143107	transcription start site region 143107	1179 bp downstream
Tssr143108	transcription start site region 143108	1153 bp downstream
Tssr143109	transcription start site region 143109	1135 bp downstream
Tssr143110	transcription start site region 143110	405 bp downstream
Tssr143111	transcription start site region 143111	272 bp downstream
Tssr146788	transcription start site region 146788	1300 bp upstream
Tssr146789	transcription start site region 146789	1277 bp upstream
Tssr146790	transcription start site region 146790	1261 bp upstream
Tssr146791	transcription start site region 146791	1225 bp upstream
Tssr146792	transcription start site region 146792	817 bp upstream
Tssr146793	transcription start site region 146793	776 bp upstream