rs3153968 SNP Detail

Summary

• ID
  rs3153968
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25113000 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATGT CTGGAGCACG CAGCAGGCTT
  Y
  CTCATCTCAC CCTCAACACC TTGAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39516625	mCV25252073	ABI	CRAMUS_MOUSE	f	SNP		C	C					T
ss48357351	NES12239560	PERLEGEN	MM_PANEL2	f	SNP	C			C	C	C	C		C	C	C	C		T	C	T	T		C
ss60551966	NES16573507	PERLEGEN	MM_PANEL2	f	SNP						C					C	C		T
ss145369174	ENSMUSSNP3216905	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C
ss325334800	CHEV_17_25030971	CHEVERUD	SCREENING_POP	f	SNP													C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs3153968					SNP	C	C	C	C	C	C	C	T	C	C	C	C	C	T	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48357351	NES12239560	PERLEGEN	MM_PANEL	f	SNP	C/T
ss60551966	NES16573507	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25113000 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8748	CpG island 8748	503 bp proximal
Eme2	essential meiotic structure-specific endonuclease subunit 2	within coordinates
Mrps34	mitochondrial ribosomal protein S34	1094 bp upstream
Rr339337	regulatory region 339337	within coordinates
Spsb3	splA/ryanodine receptor domain and SOCS box containing 3	1874 bp downstream
Tssr143113	transcription start site region 143113	1091 bp upstream
Tssr143114	transcription start site region 143114	1493 bp upstream
Tssr146794	transcription start site region 146794	1021 bp downstream
Tssr146795	transcription start site region 146795	1434 bp downstream