rs3153969 SNP Detail

Summary

• ID
  rs3153969
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25113095 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTAGAATTC TCAGTTCCTC
  CTCCATGCCT GGCCAGTTTG CAGTCAGGTC ACTATTCTCC TAAAGGCTCT CTAACGCTCT
  GATGTCTGGA GCACGCAGCA GGCTTTCTCA TCTCACCCTC AACACCTTGA TGATCCTCGA
  CAGAAGCTCC ATCCCATCCC AGACTGTCAA AGGAGACCCA TCAAATAAAG ATAGGGCTTT
  Y
  CCCCATTACC TGGGTCAGCT GCGCAGCACC CTGAAGAAAT TCCTGGGGTT CCAGCAGCAG
  CAACTGTTCC TGCTCATTTT CAGCCTTCGC CTCCAGAGGC ACCTATAGGG GATATCAGCT
  GCCCTGCTAA CCACCAGTGT GAGCCCAGGG CTTCTCCCTG TGCTGGCCAG TCAGTCACCA
  GACACTATCA ATAACCCTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss39533610	mCV25252074	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss145369180	ENSMUSSNP742870	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs3153969					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25113095 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8748	CpG island 8748	408 bp proximal
Eme2	essential meiotic structure-specific endonuclease subunit 2	within coordinates
Mrps34	mitochondrial ribosomal protein S34	999 bp upstream
Rr339337	regulatory region 339337	within coordinates
Spsb3	splA/ryanodine receptor domain and SOCS box containing 3	1969 bp downstream
Tssr143113	transcription start site region 143113	996 bp upstream
Tssr143114	transcription start site region 143114	1398 bp upstream
Tssr146794	transcription start site region 146794	926 bp downstream
Tssr146795	transcription start site region 146795	1339 bp downstream