rs31540330 SNP Detail

Summary

• ID
  rs31540330
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171075892 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTGCAGAG GAAGAGGAGA
  AAGCCAGATT TCTAGGCTAA AAATTGACCT AATGGGAAGC ATACCAAAGG GTGGGGCCAG
  AGATCCGTTG GCTGTGGGAA CTGACCAAGA CCTGGTGTAG ACAAGGTGGT CCCCAGAAAG
  TCAAGGCAGA GGCTTGGTCC CCTTACCCTC TACAGCCACC TCTCCTTTTC TGGGCCTTTC
  Y
  TCCTGAGATA TAGTTTAAAC ACAAAATGTG GTGATGATGG GAGGGGGGGT TCCTCATTTT
  TGTGTTAATC CATCCTATGT GAAGTCAAGA CAGACTCTAG CTTGCTTAGC CCTGGGGGTA
  GTTCAAGCAG GAACTGGGAT GAGAACTCTT GGGGGGCTAC CTAGGACACT GCATCTTTTG
  TGCCTTCTCC TTCTGCCAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49750550	NES13032446	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31540330					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49750550	NES13032446	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171075892 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1016	CpG island 1016	803 bp distal
Gm71631	predicted gene, 71631	within coordinates
Ndufs2	NADH:ubiquinone oxidoreductase core subunit S2	within coordinates
Rr372446	regulatory region 372446	within coordinates
Rr423259	regulatory region 423259	711 bp distal
Rr423260	regulatory region 423260	1163 bp distal
Rr423261	regulatory region 423261	636 bp distal
Rr423262	regulatory region 423262	290 bp proximal
Rr423263	regulatory region 423263	1506 bp proximal
Rr423264	regulatory region 423264	1786 bp proximal
Tssr10000	transcription start site region 10000	946 bp downstream
Tssr15023	transcription start site region 15023	1202 bp upstream