rs31540331 SNP Detail

Summary

• ID
  rs31540331
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171075820 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCAA GACCTGGTGT AGACAAGGTG
  R
  TCCCCAGAAA GTCAAGGCAG AGGCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45113263	mCV23616727	ABI	CRAMUS_MOUSE	f	SNP		A	A					G		A
ss49750551	NES13032445	PERLEGEN	MM_PANEL2	f	SNP	A		A	G	A	G	A		G	A	A	A		G	A	A	A		A
ss119996782	PARCsnp_1.12468	PARC_SEQ	INBRED	f	SNP								G		A
ss119998531	PARCsnp_1.01534	PARC_SEQ	INBRED	f	SNP								G		A
ss146158254	ENSMUSSNP6769945	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A
ss320117550	CHEV_1_173178382	CHEVERUD	SCREENING_POP	f	SNP													A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31540331					SNP	A	A	A	G	A	G	A	G	G	A	A	A	A	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49750551	NES13032445	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171075820 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1016	CpG island 1016	731 bp distal
Gm71631	predicted gene, 71631	within coordinates
Ndufs2	NADH:ubiquinone oxidoreductase core subunit S2	within coordinates
Rr372446	regulatory region 372446	within coordinates
Rr423259	regulatory region 423259	639 bp distal
Rr423260	regulatory region 423260	1091 bp distal
Rr423261	regulatory region 423261	564 bp distal
Rr423262	regulatory region 423262	362 bp proximal
Rr423263	regulatory region 423263	1578 bp proximal
Rr423264	regulatory region 423264	1858 bp proximal
Tssr10000	transcription start site region 10000	874 bp downstream
Tssr15023	transcription start site region 15023	1130 bp upstream