rs31540333 SNP Detail

Summary

• ID
  rs31540333
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171074986 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGAACGGAAC AACATCCGGA
  TTCCGCTTCT CAGCTTCACT TGCGTTTCAA TAACGACGAC TGCCGTCATC TTTAGTAAGG
  GCGTCCCTCC CACGGCTTCT CTGGGCGTGA GAGATTTACT GCTCTCTCCT GAGGCAACTT
  CGCGCAGAAT CCAGCACTTC CCGCTAGGTC CACGCTCTGC ACTCGAACTT TCCTTAGAAA
  M
  TGCGCTCCCT CTAGGTCCCC TACGCACTCT CTGTATGGGC GTTCCTTGAC TATCTTACCA
  TCTTGGTCAG TCTCCTGCGG TAGTCCTGCT TTCCGACAGA AGCCCCCAAG TTTTGATGAC
  TATCTCTTTA CTACGAAATC CAAAAGTGTT CATTTCCAGA GGTCCGGAAA CGGGCTTGTG
  TGAAGGGACT CAAGTGCAGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45046988	mCV23616728	ABI	CRAMUS_MOUSE	f	SNP		A	C					C		C
ss49750554	NES13032442	PERLEGEN	MM_PANEL2	f	SNP	A		C	C	A	C	A		C	C	C	C		C	C	C	C		C
ss146158250	ENSMUSSNP3716007	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C							C
ss320117548	CHEV_1_173177548	CHEVERUD	SCREENING_POP	f	SNP													A					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31540333					SNP	A	A	C	C	A	C	A	C	C	C	C	C	A	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49750554	NES13032442	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171074986 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1016	CpG island 1016	within coordinates
Gm71631	predicted gene, 71631	within coordinates
Ndufs2	NADH:ubiquinone oxidoreductase core subunit S2	within coordinates
Rr372446	regulatory region 372446	within coordinates
Rr423259	regulatory region 423259	within coordinates
Rr423260	regulatory region 423260	257 bp distal
Rr423261	regulatory region 423261	249 bp proximal
Rr423262	regulatory region 423262	1196 bp proximal
Tssr10000	transcription start site region 10000	40 bp downstream
Tssr15023	transcription start site region 15023	296 bp upstream