rs31541475 SNP Detail

Summary

• ID
  rs31541475
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30824667 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGATA CTGCGGACAC AGTGGACTCC
  R
  GTTATCGAGG CGCCTGCCAC CCGAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss46042817	mCV24561330	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs31541475					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30824667 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18836	CpG island 18836	within coordinates
Cpgi18837	CpG island 18837	952 bp proximal
Rr645025	regulatory region 645025	614 bp proximal
Rr645026	regulatory region 645026	1592 bp proximal
Scn1b	sodium channel, voltage-gated, type I, beta	within coordinates
Tssr71935	transcription start site region 71935	1474 bp downstream
Tssr71936	transcription start site region 71936	1517 bp downstream
Tssr71937	transcription start site region 71937	1679 bp downstream
Tssr71938	transcription start site region 71938	1708 bp downstream
Tssr71939	transcription start site region 71939	1751 bp downstream
Tssr71940	transcription start site region 71940	1922 bp downstream