rs31542877 SNP Detail

Summary

• ID
  rs31542877
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54413894 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTAGC ATGCAGTTGT TAACTATGTC
  R
  GATGTGTGAG CAAGATATGA ATACA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39300878	mCV23057143	ABI	CRAMUS_MOUSE	f	SNP		G	G					A		G
ss62393425	NES17236644	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G		G	G	G	G		A	G	G	G		G
ss139557223	ENSMUSSNP1544390	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G							G
ss324635246	CHEV_14_54796112	CHEVERUD	SCREENING_POP	f	SNP													G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31542877					SNP	G	G	G	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62393425	NES17236644	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54413894 () rs orientation: forward

Symbol	Name	Function Class
A430107P09Rik	RIKEN cDNA A430107P09 gene	within coordinates
Rr492148	regulatory region 492148	within coordinates
Tcra	T cell receptor alpha chain	within coordinates
Traj40	T cell receptor alpha joining 40	1484 bp upstream
Traj41	T cell receptor alpha joining 41	112 bp downstream
Traj42	T cell receptor alpha joining 42	601 bp downstream
Traj43	T cell receptor alpha joining 43	1639 bp downstream
Tssr125563	transcription start site region 125563	1811 bp downstream
Tssr125564	transcription start site region 125564	1558 bp downstream
Tssr125565	transcription start site region 125565	1469 bp downstream
Tssr125566	transcription start site region 125566	455 bp downstream
Tssr125567	transcription start site region 125567	218 bp downstream
Tssr125568	transcription start site region 125568	201 bp downstream
Tssr125569	transcription start site region 125569	181 bp downstream
Tssr125570	transcription start site region 125570	152 bp downstream
Tssr128543	transcription start site region 128543	220 bp downstream