rs31543276 SNP Detail

Summary

• ID
  rs31543276
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:36054611 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGCAAGCC TCTAGCTACG
  TATGCCATCT TCGGTTGCAG CACCGTGCGG GGTGCCCAGA TCAGAAACCA GCCAAGGTGG
  CAGAGTCTGT AGGAAGAGCC AAAGACTGAA GTGGGACAGC GCCTACCAAA ACTACACACA
  GGCACTTAAA GGGCTGCTCT CACGTGACCC AGCGCCTCGC ATCCGGGCCG CGCACGGACC
  S
  GCAGTACCCC TGAGTCACCT CGGCTGCAGC AGCAGGATCG GGACCCGTCG CAACTGGTTC
  CTGTCCACCG CAGCCAACAA CGCCGCCGCC GCCATCTCCG CGCTGTTCTG CTGGATTCCA
  AAAGCTGCTT GGCTTATTCT TGAAAGCGTC CCTCCCTGCG CAAGCTTCTT GTCCCCGATC
  CGCCACCGTA GCTCCGAAGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss45546088	mCV24305394	ABI	CRAMUS_MOUSE	f	SNP		C	G			G	G
ss51452904	NES14433072	PERLEGEN	MM_PANEL2	f	SNP	C			C	C			G	G	G	G	G
ss134776680	ENSMUSSNP551729	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs31543276					SNP	C	C	G	C	C	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51452904	NES14433072	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:36054611 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13078	CpG island 13078	within coordinates
Mccc1	methylcrotonoyl-Coenzyme A carboxylase 1 (alpha)	within coordinates
Mccc1os	methylcrotonoyl-Coenzyme A carboxylase 1 (alpha), opposite strand	within coordinates
Rr397641	regulatory region 397641	92 bp upstream
Rr575296	regulatory region 575296	539 bp distal
Rr575297	regulatory region 575297	17 bp distal
Rr575298	regulatory region 575298	206 bp proximal
Rr575299	regulatory region 575299	308 bp proximal
Tssr28858	transcription start site region 28858	22 bp downstream
Tssr33012	transcription start site region 33012	102 bp downstream
Tssr33013	transcription start site region 33013	155 bp downstream
Tssr33014	transcription start site region 33014	188 bp downstream
Tssr33015	transcription start site region 33015	200 bp downstream