rs31543897 SNP Detail

Summary

• ID
  rs31543897
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:87753522 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAAG CTGTGAGATA GCTCAGAGTC
  R
  ACCCCAACAG CCAATCCTGC CATTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
ss45545988	mCV23485247	ABI	CRAMUS_MOUSE	f	SNP		A	G			A	G
ss51575828	NES14668902	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G		G	G		G		A
ss135468468	ENSMUSSNP5361730	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G				G
ss320835409	CHEV_3_87650137	CHEVERUD	SCREENING_POP	f	SNP									G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
rs31543897					SNP	A	A	G	G	G	A	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51575828	NES14668902	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87753522 () rs orientation: forward

Symbol	Name	Function Class
Rr367451	regulatory region 367451	658 bp upstream
Rr579559	regulatory region 579559	50 bp proximal
Sh2d2a	SH2 domain containing 2A	540 bp upstream
Tssr29832	transcription start site region 29832	916 bp downstream
Tssr29833	transcription start site region 29833	510 bp upstream
Tssr29834	transcription start site region 29834	563 bp upstream
Tssr29835	transcription start site region 29835	625 bp upstream
Tssr29836	transcription start site region 29836	666 bp upstream
Tssr29837	transcription start site region 29837	773 bp upstream
Tssr29838	transcription start site region 29838	789 bp upstream
Tssr29839	transcription start site region 29839	921 bp upstream
Tssr33958	transcription start site region 33958	374 bp downstream
Tssr33959	transcription start site region 33959	572 bp downstream
Tssr33960	transcription start site region 33960	669 bp downstream