rs31543908 SNP Detail

Summary

• ID
  rs31543908
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:53496356 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGCC AACAGTCCAG CACAGTTTCT
  M
  AGTAGTAATT TCGGAGACAG CCCTT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45544203	mCV24468544	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	C	A
ss135182447	ENSMUSSNP744193	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		A
ss320768895	CHEV_3_53392857	CHEVERUD	SCREENING_POP	f	SNP						C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31543908					SNP	C	C	C	C	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:53496356 () rs orientation: forward

Symbol	Name	Function Class
Frem2	Fras1 related extracellular matrix protein 2	Intron
Rr576723	regulatory region 576723	1225 bp proximal
Rr576724	regulatory region 576724	1313 bp proximal