rs31544002 SNP Detail

Summary

• ID
  rs31544002
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:27917603 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTGG AGAGCCAGGC TTGGACTGGA
  K
  CGCTGCTCTG GTGTAAGTTT TCCTC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss45545606	mCV24247002	ABI	CRAMUS_MOUSE	f	SNP	G	T	T
ss134708197	ENSMUSSNP3527319	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		T
ss320689449	CHEV_3_27762376	CHEVERUD	SCREENING_POP	f	SNP				T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs31544002					SNP	G	T	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27917603 () rs orientation: forward

Symbol	Name	Function Class
Gm56777	predicted gene, 56777	within coordinates
Rr574493	regulatory region 574493	1488 bp distal
Rr574494	regulatory region 574494	within coordinates
Rr574495	regulatory region 574495	34 bp proximal
Tssr32860	transcription start site region 32860	2 bp downstream