rs3154409 SNP Detail

Summary

• ID
  rs3154409
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:116726981 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        ACACT TCATAGTTGA TTGGAGATGG
  K
  GGTCCCCCTT CGTTGTATAT TTCGA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45757635	mCV24902855	ABI	CRAMUS_MOUSE	r	SNP	C	C	C	A	C
ss149139013	ENSMUSSNP5630209	ENSEMBL	ENSEMBL_Sanger	r	SNP		C	C		C
ss321657308	CHEV_5_117038931	CHEVERUD	SCREENING_POP	r	SNP						C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3154409					SNP	G	G	G	T	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:116726981 () rs orientation: reverse

Symbol	Name	Function Class
Rr618510	regulatory region 618510	within coordinates
Rr618511	regulatory region 618511	937 bp proximal
Srrm4	serine/arginine repetitive matrix 4	Intron