rs31544215 SNP Detail

Summary

• ID
  rs31544215
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151837235 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AATAGCAACA CTACAGTTTC GAAGCAGCAA TAAAATAATT TTAGGTTTGG GAGTCACCAC
  AACAGGAGTA ACTGGACTAA AGGCCACTGG TCTATAGGCA TCTGATGGAG GCACTTTCTC
  AGCATAGGTT CCTCTTCCCA GATAACTCTA GCTTGTATAA AGCTGACGAA AGAAAGAGAG
  AAGGAAGGAA GGAAGGAAGG AAGGAAGGAA GGAAGGAAGG AAGGAAGGAA AGAAAGAAGA
  AAAGAGAAGA GAAGGGAAGG GAAGGGAAGG GAAGGGAAGG GAAGGGAAGG GAAGGGAAGG
  R
  AAGGAAAGGA AAGGAAAGGA AAGGAAAGGA AAGGAAAGGA AAGGAAAGGA AAGGAAAGGA
  AAGGAAAGGA AAGGAAAGGA AAGAACAAGT AAGAATGAGC AATATCTCGG TCAGCGCAAG
  TGTTGGCTAT GTCTGCAAGC ATGGGTATAT AAAGTCCAGG AGTGGTGTGT GTGTGTGTCT
  AATCCCAGCT TGGAGAGGCT GAAGCAAGAG GACTCCTGGA ACTTGCCCAG ATCCCAGTGA
  GAGATCCTGT CTCTGAAAAG ACAGTAGATA GCTCCTGAGG GACACCACCT GACATTGACC
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss45545700	mCV23509586	ABI	CRAMUS_MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs31544215					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151837235 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gipc2	GIPC PDZ domain containing family, member 2			Intron
				Noncoding-Transcript-Variant
Rr587462	regulatory region 587462			184 bp distal
Rr587463	regulatory region 587463			1935 bp proximal