rs31544773 SNP Detail

Summary

• ID
  rs31544773
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126933207 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCAC ATCTGTGTCA CTGCATGGCT
  R
  CTGCAGATGC CTTCTTGAGT CAGTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss46042756	mCV23676596	ABI	CRAMUS_MOUSE	f	SNP	A	G	A
ss145879544	ENSMUSSNP4372900	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss322451442	CHEV_7_134477549	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs31544773					SNP	A	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126933207 () rs orientation: forward

Symbol	Name	Function Class
Itgal	integrin alpha L	within coordinates
Tssr69200	transcription start site region 69200	1673 bp downstream
Tssr69201	transcription start site region 69201	454 bp downstream
Tssr69202	transcription start site region 69202	410 bp downstream
Tssr69203	transcription start site region 69203	368 bp downstream
Tssr69204	transcription start site region 69204	200 bp downstream
Tssr69205	transcription start site region 69205	678 bp upstream
Tssr74988	transcription start site region 74988	1086 bp downstream