rs31544799 SNP Detail

Summary

• ID
  rs31544799
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30731557 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTGCAACTG CATTATGCAA CCCCCTCCCC CCCGCCCCGC
  TGCCTGGGAC CTGGTCTCTT GTCTGTGCTG TGACCCTGCC CATAATCTTG GAGAAGACAC
  K
  TATCCTTCCC CACAGCACCC TGAGCCTGAA AAGGCCTGCA TAGCTGCACT AGGTTGCTCC
  CTCCCAATAA GGAGGAGTCC AAGGAACTCC AGGAATTGC                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	DBA/2J	LG/J	SM/J
ss46043055	mCV22838260	ABI	CRAMUS_MOUSE	f	SNP	T	T	G
ss148696744	ENSMUSSNP1231799	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G
ss322138561	CHEV_7_31817151	CHEVERUD	SCREENING_POP	f	SNP				T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	DBA/2J	LG/J	SM/J
rs31544799					SNP	T	T	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30731557 () rs orientation: forward

Symbol	Name	Function Class
Fxyd5	FXYD domain-containing ion transport regulator 5	596 bp downstream
Rr644976	regulatory region 644976	1194 bp distal
Rr644977	regulatory region 644977	within coordinates
Rr644978	regulatory region 644978	1361 bp proximal
Tssr65829	transcription start site region 65829	721 bp upstream