rs31545190 SNP Detail

Summary

• ID
  rs31545190
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:102377866 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAAG TGCCGAGCAC CAGGGTCCTC
  R
  GTGGGGCCTG CTGGGCATCC CAAGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45545815	mCV22304566	ABI	CRAMUS_MOUSE	f	SNP		A						G
ss46816910	NES10725491	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	G	G	A	A		G	A	G		G
ss135556851	ENSMUSSNP6552622	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						G
ss320855707	CHEV_3_102274473	CHEVERUD	SCREENING_POP	f	SNP											A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31545190					SNP	A	A	A	A	G	A	G	G	A	A	A	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46816910	NES10725491	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:102377866 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13626	CpG island 13626	within coordinates
Ngf	nerve growth factor	Intron
Rr582236	regulatory region 582236	612 bp distal
Rr582237	regulatory region 582237	within coordinates
Tssr30928	transcription start site region 30928	907 bp downstream
Tssr30929	transcription start site region 30929	638 bp downstream
Tssr30930	transcription start site region 30930	618 bp downstream