rs31545489 SNP Detail

Summary

• ID
  rs31545489
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:118088599 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGTGGATAA TTATTCTTTA AAAACAAAAC AAAAACTAAC
  AAACAAAAAA CTGGGAGCCC AGGATGTAGC TTTGTGGTAG AGGGCCCACC TAGCATAGGG
  R
  TCTAGGATTC TAGCCCCAGC ATTGAAACAT ACATACAACA CCCCTCCAAA ACTAGGGATC
  AATTGGGAAC CTAGTATTTA CCAAATAAGT ATATCAAAG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46043165	mCV27568675	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A	G
ss145780885	ENSMUSSNP5299432	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31545489					SNP	G	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:118088599 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19620	CpG island 19620	359 bp proximal
Itpripl2	inositol 1,4,5-triphosphate receptor interacting protein-like 2	within coordinates
Rr381380	regulatory region 381380	1818 bp downstream
Rr654485	regulatory region 654485	743 bp distal
Rr654486	regulatory region 654486	833 bp distal
Tssr74439	transcription start site region 74439	1810 bp upstream
Tssr74440	transcription start site region 74440	1088 bp upstream