rs31545952 SNP Detail

Summary

• ID
  rs31545952
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:121913814 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTGAACCCT TAACAGAGGA GATGGAGGAT CCAGAGCACC
  CAGAAGGAAT GAATGGTAAC CCCCCAAGAC CCCCCACCCC CATCCCAAAA GACAGCAGAA
  Y
  GGAACGGAAA GCTTCAGTAG TGCCAGAGCC AAACCACAAG ACGAGCAACA TGAAGGAGGC
  CAGGAAGCTG ACTCCCTTTC TTGACTGGTG TTAAATCTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss45545432	mCV23892382	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss135735295	ENSMUSSNP5368133	ENSEMBL	ENSEMBL_Sanger	f	SNP			T
ss320908562	CHEV_3_121823083	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs31545952					SNP	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121913814 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Abca4	ATP-binding cassette, sub-family A member 4			Intron
				Noncoding-Transcript-Variant
Gm40138	predicted gene, 40138			within coordinates
Rr397978	regulatory region 397978			1927 bp upstream
Rr584235	regulatory region 584235			1007 bp distal
Rr584236	regulatory region 584236			230 bp distal
Rr584237	regulatory region 584237			1702 bp proximal