rs31548052 SNP Detail

Summary

• ID
  rs31548052
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:127310331 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGAGGGGT GTCTGTGACG
  TTTTGGTGTG ACCATGTCCA CCATGACTGG CAGCGTTTCC AAACGGTAAG AAGTAAAATC
  TCTGCTTGTC ACACCTGCGT GACCGTGGGC AAGTCATTTG TCTCATTGCC TCCTCTATTA
  TGGAATGAGT TAATGTGTAT ATACAAGCAT TCAGGATAGT GCTTGGCACA CATGAATACC
  Y
  AATACATACT GCTGGTTAGT GTGTGTGTGT GGCCACTGCT GACATTGTGG CCTCACCATT
  CACCTATGGT GTGCTCTGCC AGTGAACTTT GTTCTGACAG TCTGCTTGTG TTAACCCTCT
  CACGCAGGCT TTTCCAGTTT CCTTTCTCAC AAGCTCCACT CAAGTGGAAA CTTCTGGTTT
  GGAAAGTCAG TTATATCAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46044268	mCV24290405	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C	C
ss145882027	ENSMUSSNP4340512	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31548052					SNP	C	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:127310331 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19760	CpG island 19760	1942 bp distal
Cpgi19761	CpG island 19761	1904 bp proximal
Ctf1	cardiotrophin 1	1577 bp upstream
Rr655876	regulatory region 655876	1736 bp distal
Rr655878	regulatory region 655878	within coordinates
Rr655879	regulatory region 655879	1087 bp proximal
Rr655880	regulatory region 655880	1796 bp proximal
Tssr69270	transcription start site region 69270	1550 bp upstream