rs3154811 SNP Detail

Summary

• ID
  rs3154811
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:46570098 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGCTCGC GTCGCTCACA
  GAACTAGCTC GTGGACACTC TAGACACTTT TAGGTGACTG CGCCCGAGGC ACCTCTGATT
  ATCACATCCG TTTTTGTTAC TGCAGTTTAA ACGCTCGAAA GCCCTTCATG TCAAGTTCGC
  AAGGGCAAAG GAGATTTTTT TTCCCCCGTT AGGAAGCTAT GCGGTAATTT TCTCCTCTGG
  R
  TACTTTCCCC TAACAATTCC AGTGTGCCCA CATAAAGATT AGACAGGCCG CAGTCTGCCT
  TGCTTGAGGG CAGGCTTCTT TTCAGATTAT AAAGAATTTA CCCCTTCAAA CTTCTGAGTT
  TGAAGCCTCT CCAGTGTTAA TCCCAAAAAG GCAAGGAGCA AGATCATGGA CCCAAATCAT
  CATAGCCAAA TTAATTAAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss371216119	MGP_WTSI_7_54175720	EVA_MGPV3	EVA_MGPV3	f	SNP	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	G	A	G	A	A	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs3154811					SNP	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	G	A	G	A	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss371216119	MGP_WTSI_7_54175720	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:46570098 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19130	CpG island 19130	within coordinates
Gm72880	predicted gene, 72880	within coordinates
Rr157000	regulatory region 157000	903 bp proximal
Rr167817	regulatory region 167817	within coordinates
Tsg101	tumor susceptibility gene 101	381 bp upstream
Tssr66735	transcription start site region 66735	321 bp downstream
Tssr66736	transcription start site region 66736	298 bp downstream
Tssr66737	transcription start site region 66737	174 bp downstream
Tssr66738	transcription start site region 66738	156 bp downstream
Tssr72572	transcription start site region 72572	442 bp upstream
Tssr72573	transcription start site region 72573	364 bp upstream