rs31548610 SNP Detail

Summary

• ID
  rs31548610
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172332418 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTACTCGCT CCCGCTCTTG GCATAGGTTT CCCATATGCT
  CTGTACTCTC ATTTCCTGAA TCATTTTTAA GGCTTCAAAG AGGAGGGTTG GGGGCTAGAC
  Y
  TCGCCTCTGT CAAGCTTCAT CACTCCAAAT GAGAAGCTGA ACTAAAATCC TTTACCTCAT
  CCTGCATTCC AGTGGGTCCC AGGCGTCATT CTAGACACA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45043960	mCV24953242	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss120011639	PARCsnp_1.19898	PARC_SEQ	INBRED	f	SNP		C	T
ss120014576	PARCsnp_1.09945	PARC_SEQ	INBRED	f	SNP		C	T
ss146193926	ENSMUSSNP7010599	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		T
ss320125771	CHEV_1_174434982	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31548610					SNP	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172332418 () rs orientation: forward

Symbol	Name	Function Class
Rr29013	regulatory region 29013	817 bp distal
Rr29014	regulatory region 29014	17 bp distal
Tagln2	transgelin 2	within coordinates
Tssr10219	transcription start site region 10219	412 bp upstream
Tssr10220	transcription start site region 10220	900 bp upstream
Tssr10221	transcription start site region 10221	942 bp upstream
Tssr10222	transcription start site region 10222	1028 bp upstream
Tssr10223	transcription start site region 10223	1375 bp upstream
Tssr10224	transcription start site region 10224	1721 bp upstream
Tssr10225	transcription start site region 10225	1760 bp upstream
Tssr10226	transcription start site region 10226	1773 bp upstream
Tssr10227	transcription start site region 10227	1814 bp upstream
Tssr10228	transcription start site region 10228	1866 bp upstream
Tssr10229	transcription start site region 10229	1916 bp upstream
Tssr10230	transcription start site region 10230	1937 bp upstream
Tssr10231	transcription start site region 10231	2000 bp upstream