rs31549389 SNP Detail

Summary

• ID
  rs31549389
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127484370 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTGTTTG TTTTGATTTC
  TGTTGCTGTT GTTTTGAGTC ACGATTTTAC TAAGTAGCCC TGGCTGGCCT GGATCTCTGC
  ATATATACCA GGCTGGCTTC AAACTCAGAG GTCTGTTTGT CTCTGCCTCC TGAGTGTTGA
  GATGAAAGGT GTATATATCA CTATACCTGT GAAAGATTTA TTTCTAATTA TGTTGAATGT
  K
  TGTGTATGTT TGGGGAGGGG ATGGGAGTGG GCAGGGTATA TGCATGTGAG GGCAGGTGCC
  CACAAAAGCC AGAAGGGGCA TCAGATACCC TGGAGCTAGA GTTATAGGTG GTTGTCATCC
  ACCTAACATG GGTGCTGGGA ACTGAACCCA AGTTCTCTGC AAGAGCTGCA TGTAGTTTTA
  ACTATTAAGC CATCCCTCTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss45545474	mCV23994715	ABI	CRAMUS_MOUSE	f	SNP	G	T
ss320956110	CHEV_3_127393639	CHEVERUD	SCREENING_POP	f	SNP			T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs31549389					SNP	G	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127484370 () rs orientation: forward

Symbol	Name	Function Class
Alpk1	alpha-kinase 1	within coordinates
Gm16238	predicted gene 16238	1214 bp downstream
Tssr35587	transcription start site region 35587	27 bp downstream
Tssr35588	transcription start site region 35588	570 bp downstream
Tssr35589	transcription start site region 35589	1825 bp downstream