rs31549553 SNP Detail

Summary

• ID
  rs31549553
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95616233 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATGCCTTTA ATGCCAGCAC TTGGGAGGCA GAGGCAGGTG
  GATTTCTGAG TTCGAGGCCA GTCTGGAGTT CCGGGACAGC CAGGGCTACA CAGAGAACCC
  Y
  TGTCTCAAAA AACAAAAAAC ACACACACAA CCAAAGGCAT ATCTGGAGTC TGTGTAGATG
  TTTGAGAATT GTCCTAGTGC TAATTGGAAA GCATGGGTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45545078	mCV22766729	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C	T
ss135512730	ENSMUSSNP3891715	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31549553					SNP	T	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95616233 () rs orientation: forward

Symbol	Name	Function Class
D3Umi14	DNA segment, Chr 3, University of Michigan 14	934 bp distal
Rr367486	regulatory region 367486	1223 bp downstream
Tssr34521	transcription start site region 34521	1774 bp downstream