rs31549840 SNP Detail

Summary

• ID
  rs31549840
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:41579815 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACCAGATTT ATGTAATATT TAAATGATTT TTATGATGAT
  TTGTTTGAGA GTTGCTCTAA AAAGACAGTA TAGCTAGGAA ATTGTATCTG CTGAATAAAT
  R
  AATGGCCAAA TTGCTGCTAA TTTTCTCCTG TATGTGGGGT ACTAGAGTTC TCACACAGAA
  AAGAATTTGG AGACTACAGA CTGTCCCAAT TTGCATATT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45544481	mCV24365042	ABI	CRAMUS_MOUSE	f	SNP		G	G	A
ss135042549	ENSMUSSNP2459821	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		A
ss320728932	CHEV_3_41429302	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31549840					SNP	A	G	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:41579815 () rs orientation: forward

Symbol	Name	Function Class
Gm66500	predicted gene, 66500	within coordinates
Sclt1	sodium channel and clathrin linker 1	1340 bp downstream