rs31550002 SNP Detail

Summary

• ID
  rs31550002
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171182841 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGCTGGGAG TTGAGCCCCA GTGCCTCTTG CATGCTGAGG
  CCATTCTCAC TGAGTTGTAC CTTCAGCCCT GAGCTAATAT GATAAAGCTT ATGTGGCTTA
  R
  TGGGAAAGCA CACGCCGCAC AGGCGTGCCT GCCTGAGCAT GGTCCTGGAA ACTCATAGCC
  GCTAACTGAA GCTCCAGATG AATCTGATAC CCTCTTCTT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss45117230	mCV23010513	ABI	CRAMUS_MOUSE	f	SNP	A	A			G
ss49750253	NES13030491	PERLEGEN	MM_PANEL2	f	SNP		A	G	G		A			G	A	A		A
ss119997781	PARCsnp_1.12968	PARC_SEQ	INBRED	f	SNP					G		A
ss119999719	PARCsnp_1.02128	PARC_SEQ	INBRED	f	SNP					G		A
ss146160874	ENSMUSSNP1997314	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss320118200	CHEV_1_173285404	CHEVERUD	SCREENING_POP	f	SNP								G				A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs31550002					SNP	A	A	G	G	G	A	A	G	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49750253	NES13030491	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171182841 () rs orientation: forward

Symbol	Name	Function Class
Gm37154	predicted gene, 37154	within coordinates
Pfdn2	prefoldin 2	within coordinates
Rr423296	regulatory region 423296	268 bp proximal
Rr423297	regulatory region 423297	522 bp proximal
Rr423298	regulatory region 423298	620 bp proximal
Rr423299	regulatory region 423299	883 bp proximal
Tssr10022	transcription start site region 10022	1289 bp upstream