rs31550003 SNP Detail

Summary

• ID
  rs31550003
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171181128 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAGA CCTTGTCTCA AAACAAGCAA
  R
  AAACCATGCA CACAAACAAC CACAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss49750254	NES13030493	PERLEGEN	MM_PANEL2	f	SNP	A	G	G		A			G	A	A		A
ss119997773	PARCsnp_1.12964	PARC_SEQ	INBRED	f	SNP				G		A
ss119999706	PARCsnp_1.02121	PARC_SEQ	INBRED	f	SNP				G		A
ss146160861	ENSMUSSNP5909584	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss320118191	CHEV_1_173283691	CHEVERUD	SCREENING_POP	f	SNP							A				A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs31550003					SNP	A	G	G	G	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49750254	NES13030493	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171181128 () rs orientation: forward

Symbol	Name	Function Class
Gm37154	predicted gene, 37154	566 bp upstream
Pfdn2	prefoldin 2	within coordinates