rs31551198 SNP Detail

Summary

• ID
  rs31551198
• Variation Type
  SNP
• Alleles
  A/C/G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:191012099 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CCCTGATTAA TTAGAGAAGC CCCCGACATC CTGTGAATCT GCTGTGGAAC ACCCCACAGT
  GTATTGTGTA TTGGGCTGCT ACATTGTATA ATAAATGTGC ACCATTGTTA CTTACCAATT
  AATAGTGATA AAAGATGTCC AAGCTATCGC CTTCCCAGAG CTCTTAGAAT GCATGGTGAG
  ATGTTTACTG TTACAGTTTA TATGTATGTA TCTTGGTCAG GGTTTCTATT CCTGCACAAA
  CATCATGACC AAGAAGCAAG TTGAGGAGGA AAGGGTTTAT TCAGCTTACA CTTTCCACAT
  N
  GCTGTTCATC ACTGAAAGAA GTCAGGACTG GAACTCAAGC AGGTCAGGAA GCAGGAGCTG
  ATGCAGAGGC CATGGAGGGA TGTTCCTTAC TGGATTAAGA CAGTAAGTCT TTCTGCACAA
  GTGTAGTACA CTGTGTCTGT GCCTGCTGCC TATGGGATTC AGAAAAGGAT CTTGATCCTC
  TTGAGCTGGA GTTATGCATG GTTGTGGACC TCCATGGGGT TGCTGGCAAC AGAACACAGG
  TCCTCTGCAA GAGCAGCAAG TGCTCTTAGC GGCTGAGTTT CTTTTCAGCC CTAAGATGAT
                                                                   
  
  N = A/C/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45044251	mCV23988590	ABI	CRAMUS_MOUSE	f	SNP	T	T	A	A
ss45133647	mCV23988581	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G
ss45150520	mCV23988601	ABI	CRAMUS_MOUSE	f	SNP	C	C	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31551198					SNP	?	?	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:191012099 () rs orientation: forward

Symbol	Name	Function Class
Gm37168	predicted gene, 37168	within coordinates
Rr396719	regulatory region 396719	1947 bp downstream
Rr426096	regulatory region 426096	1556 bp distal
Rr426097	regulatory region 426097	822 bp proximal
Tssr373	transcription start site region 373	925 bp downstream
Tssr10760	transcription start site region 10760	1512 bp upstream
Tssr10761	transcription start site region 10761	1521 bp upstream
Tssr10762	transcription start site region 10762	1551 bp upstream
Tssr10763	transcription start site region 10763	1565 bp upstream
Tssr10764	transcription start site region 10764	1595 bp upstream