rs31551213 SNP Detail

Summary

• ID
  rs31551213
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171124315 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTTG TTTGATAGTA TGTTCTTAGT
  Y
  TCTTCCTTTC ATTCTCAGTG TTGCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45050565	mCV22659307	ABI	CRAMUS_MOUSE	f	SNP			C					T		C
ss49750364	NES13031214	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	C	T	C		C	C	C	C		T	C	C	C		C
ss119997271	PARCsnp_1.12712	PARC_SEQ	INBRED	f	SNP								T		C
ss119999091	PARCsnp_1.01814	PARC_SEQ	INBRED	f	SNP								T		C
ss146159497	ENSMUSSNP3578912	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							C
ss320117876	CHEV_1_173226873	CHEVERUD	SCREENING_POP	f	SNP													C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31551213					SNP	C	C	C	T	C	T	C	T	C	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49750364	NES13031214	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171124315 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1022	CpG island 1022	1860 bp distal
Rr28967	regulatory region 28967	1115 bp distal
Rr31956	regulatory region 31956	within coordinates
Rr372447	regulatory region 372447	86 bp downstream
Tssr15031	transcription start site region 15031	1955 bp upstream
Tssr15032	transcription start site region 15032	1903 bp upstream
Tssr15033	transcription start site region 15033	1731 bp upstream
Ufc1	ubiquitin-fold modifier conjugating enzyme 1	1740 bp upstream