rs31551604 SNP Detail

Summary

• ID
  rs31551604
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171045322 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAGCCCCT ATACAATGTG
  AGGCCCCCAT CTGTGGCCCC TGCCACCTTG CCCTTCCCAG TCTCCTCTCT CAGACAGACC
  CGGAGTTACC CAAAGAGAAG AGATAGATCA GCTACAAGAG GAGATGGCGC TGATTCTGAA
  CAACCACATT ATGGAACAAC AGTCTCGGCT CCAAAGTCGG TAGGGAGGAA GGAGGCAGCG
  R
  ATTCGGAGGC TGCGCCGGGG GTAGGAAGGG ATCTGTGAAA CACTGAGCTC CGGATGGATG
  CATTTTACTG TTGTTTCCTT TGGGAAACCA GGTACTTAGG AATCTAGACC TTCCCTCGGA
  CCACCCCATC CATCGCACAC AGTATCCAGA TTGCTCAGAC TGCTGTGTTG TCTCCCTTTT
  CCAAGTTGTT GGCTCCTGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49750710	NES13033181	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	G	G	G	G	G	G	G		G	G	G	A		G
ss320117267	CHEV_1_173147884	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31551604					SNP	G	A	G	G	G	G	G	G	G	G	G	G	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49750710	NES13033181	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171045322 () rs orientation: forward

Symbol	Name	Function Class
Nr1i3	nuclear receptor subfamily 1, group I, member 3	within coordinates
Tomm40l	translocase of outer mitochondrial membrane 40-like	within coordinates
Tssr286	transcription start site region 286	1379 bp upstream