rs31551605 SNP Detail

Summary

• ID
  rs31551605
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171042661 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCATGTTC TCTGCCATCT
  AAAACCATGC AGTGCCTGTC TCTATCTCAC AGACGAACAG TCAGCAAAAC CATTGGTCCC
  ATCTGTCCGT TTGCTGGAAG GTGTGAGGTC AGCAAGGCCC AGAGACGCCA CTGTCCAGCC
  TGCAGGTTGC AGAAGTGTCT AAATGTTGGC ATGAGGAAAG ACAGTGAGTT GGTCCCTACC
  R
  TTCCAGGAGT CCATTGGTGC TTCTCTGCTT TTGTTCAGGT TCCCACAGCA GGCAAAGTGA
  GCTGTTGGAA ACCAATCAGA TTCTGCCTGT TTTCAAAACT TCTAATCTCT TGTTTTAAAA
  AGCACTTATT TTTAATGTGT GTGTTCACCT GCATATATGT CTAAGTACCA TGTGTGTGCC
  TGGTGCCCAC AAAGGCTAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49750715	NES13033278	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31551605					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49750715	NES13033278	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171042661 () rs orientation: forward

Symbol	Name	Function Class
Nr1i3	nuclear receptor subfamily 1, group I, member 3	within coordinates
Rr423242	regulatory region 423242	1920 bp distal
Rr423243	regulatory region 423243	1061 bp distal
Tomm40l	translocase of outer mitochondrial membrane 40-like	918 bp downstream
Tssr9983	transcription start site region 9983	1085 bp downstream
Tssr9984	transcription start site region 9984	1047 bp downstream