rs31551606 SNP Detail

Summary

• ID
  rs31551606
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171041753 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCTA AGGGAAACAG GTAGGTAATT
  Y
  GTTGGAGGCC AGAGACAAAA AGCAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49750722	NES13033269	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	C	T	C		T	C	C		T	C	C		C
ss119997961	PARCsnp_1.01249	PARC_SEQ	INBRED	f	SNP								T		C
ss146157039	ENSMUSSNP854498	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							C
ss320117239	CHEV_1_173144315	CHEVERUD	SCREENING_POP	f	SNP												C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31551606					SNP	C	C	C	T	C	T	C	T	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49750722	NES13033269	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171041753 () rs orientation: forward

Symbol	Name	Function Class
Nr1i3	nuclear receptor subfamily 1, group I, member 3	within coordinates
Rr423242	regulatory region 423242	1012 bp distal
Rr423243	regulatory region 423243	153 bp distal
Tomm40l	translocase of outer mitochondrial membrane 40-like	1826 bp downstream
Tssr9983	transcription start site region 9983	177 bp downstream
Tssr9984	transcription start site region 9984	139 bp downstream